PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g33640
Common NameGSCOC_T00015404001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YC
Protein Properties Length: 261aa    MW: 29011.7 Da    PI: 5.3131
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g33640genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC170.32.2e-53751781101
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql+sfw +q   i++ t+fknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlr+w+h+eenkrrtl+k+diaaa++rtd+fdflvdi
  Cc02_g33640  75 QLQSFWGNQrqeIDRLTEFKNHSLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAIARTDVFDFLVDI 172
                  89****999888999*********************************************************************************** PP

        NF-YC  96 vprdel 101
                  +pr++l
  Cc02_g33640 173 IPREDL 178
                  ***987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.19E-3273169IPR009072Histone-fold
PfamPF008085.1E-2297160IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.3E-3798175IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDKQDHSQPQ VSGIVGGMPQ LSYATNVYTG NPGQGSLVTS VVASQPTGQT TGVQIGEQRA  60
YQQIHQQQQQ ELEQQLQSFW GNQRQEIDRL TEFKNHSLPL ARIKKIMKAD EDVRMISAEA  120
PIVFARACEM FILELTLRAW NHTEENKRRT LQKNDIAAAI ARTDVFDFLV DIIPREDLKD  180
EALLAVPRNA MPLGESSGSL PYYYMQPQQM APARPPAPGL PVNTPAIDPT LYGQQPHPYM  240
APHLWSEATA PQQPQSPSDS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B4e-4081175197NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147153RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008246497.11e-108PREDICTED: nuclear transcription factor Y subunit C-3
SwissprotQ8L4B28e-75NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLA0A068V4E10.0A0A068V4E1_COFCA; Uncharacterized protein
STRINGVIT_14s0128g00250.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34222447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.42e-71nuclear factor Y, subunit C9